MCPs

Cellpose MCP (opens in a new tab)

Run Cellpose image segmentation, restoration, training, and visualization through an AI assistant.

Cellpose MCP poster covering cell segmentation, image restoration, custom training, and integration with napari. — View poster (PDF) (opens in a new tab)

Fiji / ImageJ MCP (opens in a new tab)

Connect an AI assistant to Fiji for image processing, macros, scripts, and results tables.

Fiji MCP poster covering image processing, command discovery, macros and scripts, measurements, and visual verification in Fiji / ImageJ. — View poster (PDF) (opens in a new tab)